Publications with Mikko Rautiainen, PhD

Postdoctoral Fellow

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Verkko2 integrates proximity ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding
Genome Research, May 19, 2025
Antipov D, Rautiainen M, Nurk S, Walenz BP, Solar SJ, Phillippy AM, Koren S
Complex genetic variation in nearly complete human genomes
bioRxiv, September 25, 2024
Logsdon GA … Koren S … Phillippy AM … Rautiainen M … Dilthey AT … Marschall T
The variation and evolution of complete human centromeres
Nature, April 3, 2024
Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Catacchio CR, Porubsky D, Mao Y, Yoo D, Rautiainen M, Koren S, Nurk S, Lucas JK, Hoekzema K, Munson KM, Gerton JL, Phillippy AM, Ventura M, Alexandrov IA, Eichler EE
The complete sequence of a human Y chromosome
Nature, August 23, 2023
Rhie A, Nurk S … Koren S, Rautiainen M … Hansen NF … Mc Cartney AM … Walenz BP … Phillippy AM
A draft human pangenome reference
Nature, May 10, 2023
Liao W-W … Koren S … Nurk S … Rautiainen M … Rhie A … Walenz B … Phillippy AM … Paten B
Telomere-to-telomere assembly of diploid chromosomes with Verkko
Nature Biotechnology, February 16, 2023
Rautiainen M, Nurk S, Walenz BP, Logsdon GA, Porubsky D, Rhie A, Eichler EE, Phillippy AM, Koren S
The complete sequence of a human genome
Science, April 1, 2022
Nurk S, Koren S, Rhie A, Rautiainen M … Hansen NF … Jain C … Mc Cartney AM … Walenz BP … Phillippy AM