Arang Rhie, PhD

Postdoctoral Fellow

arang.rhienih.gov

Arang received a BS in computer science in 2009 and MS in bioinformatics in 2011 from Ewha Womans University. She completed her PhD in 2017 at the Genome Medicine Institute, Department of Biomedical Science, Seoul National University College of Medicine. Her dissertation research aimed to build the first high-quality Korean reference genome for use in medical diagnostics. Her role in this project was to develop new computational methods to accurately phase each haplotype of the genome. Currently she is a visiting fellow in the Genome Informatics Section at NIH/NHGRI, where her research continues to focus on the reconstruction of true haplotypes from long-read sequencing and other emerging technologies.

Software

SALSA

A tool to scaffold long read assemblies with Hi-C data

Canu

A single molecule sequence assembler for genomes large and small
Publications
Reference genome and demographic history of the most endangered marine mammal, the vaquita
bioRxiv, May 28, 2020
Morin PA … Phillippy A, Rhie A … Jarvis ED
Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation
Nature Communications, April 29, 2020
Low WY, Tearle R, Liu R, Koren S, Rhie A, Bickhart DM, Rosen BD, Kronenberg ZN, Kingan SB, Tseng E, Thibaud-Nissen F, Martin FJ, Billis K, Ghurye J, Hastie AR, Lee J, Pang AW, Heaton MP, Phillippy AM, Hiendleder S, Smith TP, Williams JL
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle
Gigascience, April 3, 2020
Rice ES, Koren S, Rhie A, Heaton MP, Kalbfleisch TS, Hardy T, Hackett PH, Bickhart DM, Rosen BD, Vander LB, Maurer NW, Green RE, Phillippy AM, Petersen JL, Smith TP