Mikko Rautiainen, PhD

Postdoctoral Fellow (alum)

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Software

Verkko

Verkko is a hybrid genome assembly pipeline developed for telomere-to-telomere assembly of long accurate (e.g. PacBio HiFi) and ultra-long (e.g. Oxford Nanopore UL) reads. Verkko is Finnish for net, mesh and graph.

Publications

see all 6 publications with Mikko Rautiainen

Complex genetic variation in nearly complete human genomes

bioRxiv, September 25, 2024

Logsdon GA … Koren S … Phillippy AM … Rautiainen M … Dilthey AT … Marschall T

The variation and evolution of complete human centromeres

Nature, April 3, 2024

Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Catacchio CR, Porubsky D, Mao Y, Yoo D, Rautiainen M, Koren S, Nurk S, Lucas JK, Hoekzema K, Munson KM, Gerton JL, Phillippy AM, Ventura M, Alexandrov IA, Eichler EE

The complete sequence of a human Y chromosome

Nature, August 23, 2023

Rhie A, Nurk S … Koren S, Rautiainen M … Hansen NF … Mc Cartney AM … Walenz BP … Phillippy AM

A draft human pangenome reference

Nature, May 10, 2023

Liao W-W … Koren S … Nurk S … Rautiainen M … Rhie A … Walenz B … Phillippy AM … Paten B