Chirag Jain, PhD

Postdoctoral Fellow (alum)

chirag

iisc.ac.in

Software

Winnowmap

A long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.

MetaMaps

Long-read metagenomic analysis

MashMap

A fast and approximate long read mapper

Publications

see all 9 publications with Chirag Jain

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

Nature Methods, April 1, 2022

Mc Cartney AM, Shafin K, Alonge M, Bzikadze AV, Formenti G, Fungtammasan A, Howe K, Jain C, Koren S, Logsdon GA, Miga KH, Mikheenko A, Paten B, Shumate A, Soto DC, Sović I, Wood JM, Zook JM, Phillippy AM, Rhie A

Long-read mapping to repetitive reference sequences using Winnowmap2

Nature Methods, April 1, 2022

Jain C, Rhie A, Hansen N, Koren S, Phillippy AM

The complete sequence of a human genome

Science, April 1, 2022

Nurk S, Koren S, Rhie A, Rautiainen M … Hansen NF … Jain C … Mc Cartney AM … Walenz BP … Phillippy AM

The structure, function and evolution of a complete human chromosome 8

Nature, April 7, 2021

Logsdon GA … Koren S, Nurk S … Rhie A … Jain C … Phillippy AM, Eichler EE