Chirag Jain, PhD

Postdoctoral Fellow (alum)

chiragiisc.ac.in

Chirag develops scalable algorithms and software for data intensive computational problems in genomics. He completed his bachelor's degree in computer science from the Indian Institute of Technology Delhi and joined the Georgia Tech PhD program in fall 2014. After finishing his PhD in 2019, he joined the Genome Informatics Section as a postdoctoral fellow. He is now an assistant professor and Pratiksha Trust Young Investigator in the Department of Computational and Data Sciences at the Indian Institute of Science.

Software

Winnowmap

A long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.

MetaMaps

Long-read metagenomic analysis

MashMap

A fast and approximate long read mapper
Publications
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
bioRxiv, July 2, 2021
Mc Cartney AM, Shafin K, Alonge M, Bzikadze AV, Formenti G, Fungtammasan A, Howe K, Jain C, Koren S, Logsdon GA, Miga KH, Mikheenko A, Paten B, Shumate A, Soto DC, Sović I, Wood JM, Zook JM, Phillippy AM, Rhie A