Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

Nature Communications, July 11, 2019

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Dilthey A, Jain C, Koren S, Phillippy AM

HLA*LA - HLA typing from linearly projected graph alignments

Bioinformatics, April 3, 2019

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Dilthey AT, Mentzer AJ, Carapito R, Cutland C, Cereb N, Madhi SA, Rhie A, Koren S, Bahram S, McVean G, Phillippy AM

De novo assembly of haplotype-resolved genomes with trio binning

Nature Biotechnology, October 22, 2018

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Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM

A fast adaptive algorithm for computing whole-genome homology maps

Bioinformatics, September 1, 2018

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Jain C, Koren S, Dilthey A, Phillippy AM, Aluru S