Publications with Sergey Nurk, PhD

Postdoctoral Fellow

The complete sequence and comparative analysis of ape sex chromosomes
bioRxiv, December 1, 2023
Makova KD, Pickett BDNurk SRhie ASolar SJSweeten AKoren SPhillippy AM
The complete sequence of a human Y chromosome
Nature, August 23, 2023
Rhie A, Nurk SKoren S, Rautiainen MHansen NFMc Cartney AMWalenz BPPhillippy AM
The variation and evolution of complete human centromeres
bioRxiv, May 30, 2023
Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Mao Y, Rautiainen M, Koren S, Nurk S, Porubsky D, Lucas JK, Hoekzema K, Munson KM, Gerton JL, Phillippy AM, Alexandrov IA, Eichler EE
A draft human pangenome reference
Nature, May 10, 2023
Liao W-W … Koren SNurk SRautiainen MRhie AWalenz BPhillippy AM … Paten B
Telomere-to-telomere assembly of diploid chromosomes with Verkko
Nature Biotechnology, February 16, 2023
Rautiainen M, Nurk S, Walenz BP, Logsdon GA, Porubsky D, Rhie A, Eichler EE, Phillippy AM, Koren S
The complete sequence of a human genome
Science, April 1, 2022
Nurk S, Koren S, Rhie A, Rautiainen MHansen NFJain CMc Cartney AMWalenz BPPhillippy AM
Segmental duplications and their variation in a complete human genome
Science, April 1, 2022
Vollger MR, Guitart X, Dishuck PC, Mercuri L, Harvey WT, Gershman A, Diekhans M, Sulovari A, Munson KM, Lewis AM, Hoekzema K, Porubsky D, Li R, Nurk S, Koren S, Miga KH, Phillippy AM, Timp W, Ventura M, Eichler EE
Complete genomic and epigenetic maps of human centromeres
Science, April 1, 2022
Altemose N … Rhie A, McCartney AMNurk S, Koren SPhillippy AM … Miga KH
STRONG: metagenomics strain resolution on assembly graphs
Genome biology, July 26, 2021
Quince C, Nurk S, Raguideau S, James R, Soyer OS, Summers JK, Limasset A, Eren AM, Chikhi R, Darling AE
Critical Assessment of Metagenome Interpretation - the second round of challenges
bioRxiv, July 12, 2021
Meyer F … Antipov DNurk S … McHardy AC
The structure, function and evolution of a complete human chromosome 8
Nature, April 7, 2021
Logsdon GA … Koren S, Nurk SRhie AJain CPhillippy AM, Eichler EE
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
Genome Research, August 14, 2020
Nurk S, Walenz BP, Rhie A, Vollger MR, Logsdon GA, Grothe R, Miga KH, Eichler EE, Phillippy AM, Koren S