Adam Phillippy, PhD

Senior Investigator

adam.phillippynih.gov

Adam is the director of the Center for Genomics and Data Science research and head of the Genome Informatics Section at the National Human Genome Research Institute (NHGRI). His lab develops efficient methods for analyzing DNA sequencing data, including tools for genome assembly, comparative genomics, clustering, forensics, and metagenomics. He is a co-founder of the Telomere-to-Telomere (T2T) Consortium, the Human Pangenome Reference Consortium, and the Vertebrate Genomes Project, which, together, seek to enable the complete and gapless assembly of human and vertebrate genomes. He is a recipient of the U.S. Presidential Early Career Award for Scientists and Engineers, the NIH Director’s Award, the Ilchun Molecular Medicine Award from the Korean Society for Biochemistry and Molecular Biology, and a distinguished alumni award from Loyola University Maryland. He was named by TIME magazine as one of the world’s most influential people of 2022 for his work on completing the human genome, and is currently working to understand the function, evolution, and clinical relevance of the approximately 10% of the human genome newly uncovered by the T2T project.

Software

ModDotPlot

ModDotPlot is a dotplot visualization tool, built to quickly visualize large complex repeats within whole chromosomes.

Verkko

Verkko is a hybrid genome assembly pipeline developed for telomere-to-telomere assembly of long accurate (e.g. PacBio HiFi) and ultra-long (e.g. Oxford Nanopore UL) reads. Verkko is Finnish for net, mesh and graph.

Merqury

Evaluate genome assemblies with k-mers and more

Winnowmap

A long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
News posts

The formation and propagation of human Robertsonian chromosomes

September 24, 2025

The Q100 preprint!

September 22, 2025

We are looking for postbacs and postdocs!

May 12, 2025

Complete sequencing of ape genomes

April 9, 2025
Publications
Analysis of a novel human protein, ORF3, encoded by spacer rDNA
Journal of Molecular Evolution, September 19, 2025
Chen Y, Kim JH, Lee HS, Koren S, Larionov V, Phillippy AM, Schlessinger D, Nagaraja R
A complete and near-perfect rhesus macaque reference genome: lessons from subtelomeric repeats and sequencing bias
bioRxiv, August 4, 2025
Zhang S, Xu N, Lu Y, Nie Y, Li Z, de Gennaro L, Fu L, Zhang Z, Chen J, Ma K, Yang X, Zhang J, Schmitz MT, Antonacci F, Bakken TE, Ventura M, Phillippy AM, Sun Q, Mao Y