Publications with Brian Ondov

Graduate Student

Mash Screen: high-throughput sequence containment estimation for genome discovery
Genome biology, November 5, 2019
Ondov BD, Starrett GJ, Sappington A, Kostic A, Koren S, Buck CB, Phillippy AM
The Perceptual Proxies of Visual Comparison
IEEE transactions on visualization and computer graphics, August 20, 2019
Jardine N, Ondov BD, Elmqvist N, Franconeri S
Face to Face: Evaluating Visual Comparison
IEEE Trans Vis Comput Graph, August 20, 2018
Ondov BD, Jardine N, Elmqvist N, Franconeri S
Mash: fast genome and metagenome distance estimation using MinHash
Genome Biol, June 20, 2016
Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM
Krona: interactive metagenomic visualization in a web browser
Encyclopedia of Metagenomics, January 1, 2015
Ondov BD, Bergman NH, Phillippy AM
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
Genome Biol, November 19, 2014
Treangen TJ, Ondov BD, Koren S, Phillippy AM
Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923
Genome Announc, November 6, 2014
Treangen TJ, Maybank RA, Enke S, Friss MB, Diviak LF, Karaolis DK, Koren S, Ondov B, Phillippy AM, Bergman NH, Rosovitz MJ
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
Genome Biol, January 15, 2013
Treangen TJ, Koren S, Sommer DD, Liu B, Astrovskaya I, Ondov B, Darling AE, Phillippy AM, Pop M
Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis
Genome Announc, January 15, 2013
Harrington R, Ondov BD, Radune D, Friss MB, Klubnik J, Diviak L, Hnath J, Cendrowski SR, Blank TE, Karaolis D, Friedlander AM, Burans JP, Rosovitz MJ, Treangen T, Phillippy AM, Bergman NH
Psoralen Inactivation of Viruses: A Process for the Safe Manipulation of Viral Antigen and Nucleic Acid
Bioinformatics, August 22, 2012
Schneider K, Wronka-Edwards L, Leggett-Embrey M, Walker E, Sun P, Ondov B, Wyman TH, Rosovitz MJ, Bohn SS, Burans J, Kochel T
Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis
Bioinformatics, August 22, 2012
Passalacqua KD, Varadarajan A, Weist C, Ondov BD, Byrd B, Read TD, Bergman NH
Interactive metagenomic visualization in a Web browser
BMC Bioinformatics, September 30, 2011
Ondov BD, Bergman NH, Phillippy AM
An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System
Bioinformatics, August 1, 2010
Ondov BD, Cochran C, Landers M, Meredith GD, Dudas M, Bergman NH
Structure and complexity of a bacterial transcriptome
J Bacteriol, May 1, 2009
Passalacqua KD, Varadarajan A, Ondov BD, Okou DT, Zwick ME, Bergman NH
Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications
Bioinformatics, December 1, 2008
Ondov BD, Varadarajan A, Passalacqua KD, Bergman NH