Brian Ondov

Graduate Student

brian.ondovnih.gov

Brian Ondov studied computer science at RPI and bioinformatics at Georgia Tech. He now specializes in visualization and high performance algorithms, and has been the principal engineer of Krona, Gingr and Mash. As of fall 2017 he is a computer science PhD student at the University of Maryland and a pre-doctoral IRTA with the Genome Informatics Section.

Projects

Mash

Fast genome and metagenome distance and containment estimation using MinHash

Harvest

A suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes

Krona

Interactively explore metagenomes and more from a web browser
News posts

Mash Screen: what's in my sequencing run?

September 25, 2017
Publications
Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923
Genome Announc, November 6, 2014
Treangen TJ, Maybank RA, Enke S, Friss MB, Diviak LF, Karaolis DK, Koren S, Ondov B, Phillippy AM, Bergman NH, Rosovitz MJ
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
Genome Biol, January 15, 2013
Treangen TJ, Koren S, Sommer DD, Liu B, Astrovskaya I, Ondov B, Darling AE, Phillippy AM, Pop M