Brian Ondov

Graduate Student (alum)

brian.ondov

nih.gov

Brian Ondov completed his PhD in the Phillippy lab under the NIH Graduate Partnership Program, earning the degree from the University of Maryland under the advisement of Niklas Elmqvist. He has worked on Krona, Mash, and Harvest, and is now a Postdoc under Dina Demner-Fushman at the National Library of Medicine.

Software

Mash

Fast genome and metagenome distance and containment estimation using MinHash

Harvest

A suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes

Krona

Interactively explore metagenomes and more from a web browser

News posts

Mash Screen: what's in my sequencing run?

September 25, 2017

Publications

see all 15 publications with Brian Ondov

Mash Screen: high-throughput sequence containment estimation for genome discovery

Genome biology, November 5, 2019

Ondov BD, Starrett GJ, Sappington A, Kostic A, Koren S, Buck CB, Phillippy AM

The Perceptual Proxies of Visual Comparison

IEEE transactions on visualization and computer graphics, August 20, 2019

Jardine N, Ondov BD, Elmqvist N, Franconeri S

Face to Face: Evaluating Visual Comparison

IEEE Trans Vis Comput Graph, August 20, 2018

Ondov BD, Jardine N, Elmqvist N, Franconeri S

Mash: fast genome and metagenome distance estimation using MinHash

Genome Biol, June 20, 2016

Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM