Publications with Nancy Hansen, PhD

Senior Research Scientist

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The Genome In A Bottle HG002 assembly-based variant benchmark set enables comprehensive benchmarking of small and structural variants
bioRxiv, October 1, 2026
Olson ND … Hansen NF, Koren S, Rhie A … Phillippy AM, Zook JM
A complete diploid human genome benchmark for personalized genomics
Cell, August 6, 2026
Hansen NF … Rhie A … Kim J … Antipov D … Pickett BD … Rautiainen M … Solar SJ, Sweeten AP … Koren S … Phillippy AM
HPRC2: A human pangenome reference with near-complete coverage of common genetic variation
bioRxiv, July 22, 2026
Lucas JK … Koren S … Antipov D … Hansen NF … Kim J … Pickett BD … Solar SJ … Walenz BP … Rautiainen M, Rhie A … Phillippy AM … Paten B
Population-scale Y chromosome assemblies reveal recurrent remodeling within constrained architectures
bioRxiv, June 6, 2026
Hallast P, Rhie A … Koren S … Hansen NF … Phillippy AM, Lee C
The complete genome of the KOLF2.1J reference iPSC line
bioRxiv, March 9, 2026
Alvarez Jerez P, Rhie A, Kim J … Antipov D, Koren S … Hansen NF … Phillippy AM, Blauwendraat C
The complete sequence of a human Y chromosome
Nature, August 23, 2023
Rhie A, Nurk S … Koren S, Rautiainen M … Hansen NF … Mc Cartney AM … Walenz BP … Phillippy AM
The complete sequence of a human genome
Science, April 1, 2022
Nurk S, Koren S, Rhie A, Rautiainen M … Hansen NF … Jain C … Mc Cartney AM … Walenz BP … Phillippy AM
Long-read mapping to repetitive reference sequences using Winnowmap2
Nature Methods, April 1, 2022
Jain C, Rhie A, Hansen N, Koren S, Phillippy AM
A complete reference genome improves analysis of human genetic variation
Science, April 1, 2021
Aganezov S … Avdeyev P … Rhie A … Koren S … Hansen NF … Phillippy AM … Schatz MC
Telomere-to-telomere assembly of a complete human X chromosome
Nature, July 14, 2020
Miga KH, Koren S, Rhie A … Chang AM, Hansen NF … Phillippy AM
A robust benchmark for detection of germline large deletions and insertions
Nature Biotechnology, June 15, 2020
Zook JM, Hansen NF … Koren S, Phillippy AM … Salit M