Publications with Nancy Hansen, PhD

Staff Scientist

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The complete genome of the KOLF2.1J reference iPSC line
bioRxiv, March 9, 2026
Alvarez Jerez P, Rhie A, Kim J … Antipov D, Koren S … Hansen NF … Phillippy AM, Blauwendraat C
A complete diploid human genome benchmark for personalized genomics
bioRxiv, September 21, 2025
Hansen NF … Rhie A … Kim J … Antipov D … Pickett BD … Rautiainen M … Solar SJ, Sweeten AP … Koren S … Phillippy AM
The complete sequence of a human Y chromosome
Nature, August 23, 2023
Rhie A, Nurk S … Koren S, Rautiainen M … Hansen NF … Mc Cartney AM … Walenz BP … Phillippy AM
The complete sequence of a human genome
Science, April 1, 2022
Nurk S, Koren S, Rhie A, Rautiainen M … Hansen NF … Jain C … Mc Cartney AM … Walenz BP … Phillippy AM
Long-read mapping to repetitive reference sequences using Winnowmap2
Nature Methods, April 1, 2022
Jain C, Rhie A, Hansen N, Koren S, Phillippy AM
A complete reference genome improves analysis of human genetic variation
Science, April 1, 2021
Aganezov S … Avdeyev P … Rhie A … Koren S … Hansen NF … Phillippy AM … Schatz MC
Telomere-to-telomere assembly of a complete human X chromosome
Nature, July 14, 2020
Miga KH, Koren S, Rhie A … Chang AM, Hansen NF … Phillippy AM
A robust benchmark for detection of germline large deletions and insertions
Nature Biotechnology, June 15, 2020
Zook JM, Hansen NF … Koren S, Phillippy AM … Salit M