Projects with Arang Rhie, PhD
Staff Scientist
Verkko-Fillet
Post-verkko graph and assembly curation in Python
T2T-Polish
Evaluation and polishing workflows for T2T genome assemblies
Merfin
Evaluate variant calls and its combination with k-mer multiplicity
Merqury
Evaluate genome assemblies with k-mers and more
Winnowmap
A long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
SALSA
A tool to scaffold long read assemblies with Hi-C data
Canu
A single molecule sequence assembler for genomes large and small