Projects with Adam Phillippy, PhD

Investigator

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MetaMaps

Long-read metagenomic analysis

SALSA

A tool to scaffold long read assemblies with Hi-C data

MashMap

A fast and approximate long read mapper

Canu

A single molecule sequence assembler for genomes large and small

Mash

Fast genome and metagenome distance and containment estimation using MinHash

MHAP

A probabilistic sequence overlap algorithm

Harvest

A suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes

MetAMOS

A metagenomic and isolate assembly and analysis pipeline

Celera Assembler PBcR

PacBio read correction and assembly pipeline [ retired ]

Krona

Interactively explore metagenomes and more from a web browser

PanArray

Pan-genome tiling array design for rapid comparative genomics

AMOSvalidate

Automated genome assembly validation [ retired ]

Insignia

DNA signature discovery for microbial detection and diagnostics [ retired ]

Hawkeye

Visual analytics for genome assembly [ retired ]

AMOScmp

Comparative genome assembler [ retired ]

AMOS

A modular sequence assembly infrastructure [ retired ]

MUMmer

Ultra-fast alignment of large-scale DNA and protein sequences