Projects with Adam Phillippy, PhD
Senior Investigator
Merqury
Evaluate genome assemblies with k-mers and more
MetaMaps
Long-read metagenomic analysis
SALSA
A tool to scaffold long read assemblies with Hi-C data
HLA*PRG:LA
Fast and efficient HLA typing from whole-genome sequencing data
MashMap
A fast and approximate long read mapper
Canu
A single molecule sequence assembler for genomes large and small
Mash
Fast genome and metagenome distance and containment estimation using MinHash
MHAP
A probabilistic sequence overlap algorithm
Harvest
A suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes
MetAMOS
A metagenomic and isolate assembly and analysis pipeline
Celera Assembler PBcR
Krona
Interactively explore metagenomes and more from a web browser
PanArray
Pan-genome tiling array design for rapid comparative genomics
AMOSvalidate
Insignia
Hawkeye
AMOScmp
AMOS
MUMmer
Ultra-fast alignment of large-scale DNA and protein sequences