Software

HLA*PRG:LA

Fast and efficient HLA typing from whole-genome sequencing data

MashMap

A fast and approximate long read mapper

Canu

A single molecule sequence assembler for genomes large and small

Mash

Fast genome and metagenome distance estimation using MinHash

MHAP

A probabilistic sequence overlap algorithm

Harvest

A suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes

MetAMOS

A metagenomic and isolate assembly and analysis pipeline

Krona

Interactively explore metagenomes and more from a web browser

PanArray

Pan-genome tiling array design for rapid comparative genomics

MUMmer

Ultra-fast alignment of large-scale DNA and protein sequences
Retired

Celera Assembler PBcR

PacBio read correction and assembly pipeline [ retired ]

Bambus 2

Metagenomic scaffolding and variant detection [ retired ]

AMOSvalidate

Automated genome assembly validation [ retired ]

Insignia

DNA signature discovery for microbial detection and diagnostics [ retired ]

Hawkeye

Visual analytics for genome assembly [ retired ]

AMOScmp

Comparative genome assembler [ retired ]

AMOS

A modular sequence assembly infrastructure [ retired ]