Verkko is a hybrid genome assembly pipeline developed for telomere-to-telomere assembly of long accurate (e.g. PacBio HiFi) and ultra-long (e.g. Oxford Nanopore UL) reads. Verkko is Finnish for net, mesh and graph.

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Evaluate genome assemblies with k-mers and more

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A tool to scaffold long read assemblies with Hi-C data

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A single molecule sequence assembler for genomes large and small

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PacBio read correction and assembly pipeline [ retired ]

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