Projects with Sergey Koren, PhD

Staff Scientist

MashMap

A fast and approximate long read mapper

Canu

A single molecule sequence assembler for genomes large and small

Mash

Fast genome and metagenome distance estimation using MinHash

MHAP

A probabilistic sequence overlap algorithm

MetAMOS

A metagenomic and isolate assembly and analysis pipeline

Celera Assembler PBcR

PacBio read correction and assembly pipeline [ retired ]

Bambus 2

Metagenomic scaffolding and variant detection [ retired ]

AMOS

A modular sequence assembly infrastructure [ retired ]